PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00108468001
Common NameGSBRNA2T00108468001, LOC106399445, LOC106399448
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 174aa    MW: 19126.7 Da    PI: 9.5699
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00108468001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.24.2e-3957115260
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                          ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGalrnvPvG+grrk k 
  GSBRNA2T00108468001  57 PDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKP 115
                          68999***************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2956114IPR003851Zinc finger, Dof-type
PfamPF027013.8E-3259114IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.01561115IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106399IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MASQNSQGIK LFGKTITFNA NNLTNTIKKE EQQQQPEIQT KSAVGSPSSD LTAEKRPDKI  60
IACPRCKSME TKFCYFNNYN VNQPRHFCKG CQRYWTAGGA LRNVPVGAGR RKAKPPGRVG  120
GFEELLGAAT ATVDQVELDA LLVEEWRAAA SHGGFRHDFP AKRLRCYTDG QSC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.101421e-167seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00108468001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0210431e-158AC021043.4 Arabidopsis thaliana chromosome I BAC F28N24 genomic sequence, complete sequence.
GenBankBT0299901e-158BT029990.1 Arabidopsis thaliana At1g29160 mRNA, complete cds.
GenBankCP0026841e-158CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013695382.11e-129PREDICTED: dof zinc finger protein DOF1.5
RefseqXP_013695385.11e-129PREDICTED: dof zinc finger protein DOF1.5
SwissprotP683501e-105DOF15_ARATH; Dof zinc finger protein DOF1.5
TrEMBLA0A078EF941e-129A0A078EF94_BRANA; BnaC05g22130D protein
STRINGBra032292.1-P1e-110(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28092669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.11e-103Dof family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]